Mutation: Difference between revisions

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Our theoretical findings indicate that mutator hitchhiking can set in motion a self-reinforcing loss of replication fidelity, but the question of how a process as robust as natural selection could allow this to happen remains. The key fact is that natural selection, although eminently robust, is a short-sighted process that favors traits with immediate fitness benefits. The fitness cost of mutator hitchhiking is generally not anticipated because of the slow accumulation of deleterious load. When a mutator hitchhikes with a new beneficial mutation, a simple model shows that the increased deleterious load due to the mutator is in fact suppressed during the spread of the beneficial mutation. Indeed, the full fitness cost of the mutator is only realized well after the beneficial mutation has stopped spreading (''SI Text''). A mutator may therefore enjoy the immediate benefit of producing a new beneficial mutation without anticipating the eventual increase in deleterious load. Because of this delay in the accumulation of deleterious load, natural selection can drive mutation rate up to the point of no return, where fM<sup>m</sup>M<sup>u</sup><sup>2</sup> becomes the dominant term ([http://www.pnas.org/content/vol104/issue15/images/large/zpq0130757960004.jpeg Fig. 4A]); even if the increase in deleterious load is lethal, it is not anticipated ([http://www.pnas.org/content/vol104/issue15/images/large/zpq0130757960004.jpeg Fig. 4B]). At the population level, this failure to anticipate the establishment of a lethal deleterious load is partly due to the sharpness of the threshold separating lethal from viable mutation rates ([http://www.pnas.org/cgi/content/full/104/15/6266#B22 22, 24]), such that there is no slow fitness decrease to "warn" of impending extinction. [http://www.pnas.org/cgi/content/full/104/15/6266] }}
Our theoretical findings indicate that mutator hitchhiking can set in motion a self-reinforcing loss of replication fidelity, but the question of how a process as robust as natural selection could allow this to happen remains. The key fact is that natural selection, although eminently robust, is a short-sighted process that favors traits with immediate fitness benefits. The fitness cost of mutator hitchhiking is generally not anticipated because of the slow accumulation of deleterious load. When a mutator hitchhikes with a new beneficial mutation, a simple model shows that the increased deleterious load due to the mutator is in fact suppressed during the spread of the beneficial mutation. Indeed, the full fitness cost of the mutator is only realized well after the beneficial mutation has stopped spreading (''SI Text''). A mutator may therefore enjoy the immediate benefit of producing a new beneficial mutation without anticipating the eventual increase in deleterious load. Because of this delay in the accumulation of deleterious load, natural selection can drive mutation rate up to the point of no return, where fM<sup>m</sup>M<sup>u</sup><sup>2</sup> becomes the dominant term ([http://www.pnas.org/content/vol104/issue15/images/large/zpq0130757960004.jpeg Fig. 4A]); even if the increase in deleterious load is lethal, it is not anticipated ([http://www.pnas.org/content/vol104/issue15/images/large/zpq0130757960004.jpeg Fig. 4B]). At the population level, this failure to anticipate the establishment of a lethal deleterious load is partly due to the sharpness of the threshold separating lethal from viable mutation rates ([http://www.pnas.org/cgi/content/full/104/15/6266#B22 22, 24]), such that there is no slow fitness decrease to "warn" of impending extinction. <ref>[http://www.pnas.org/cgi/content/abstract/0607280104v1 ''Complete genetic linkage can subvert natural selection''] by Philip J. Gerrish, Alexandre Colato, Alan S. Perelson, and Paul D. Sniegowski, ''Proceedings of the National Academy of Sciences'' USA, published online before print April 3, 2007
</ref> }}


=== Mathematical challenges ===
=== Mathematical challenges ===
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This is patently impossible as science coupled with mathematics has shown us. Simply put the odds of getting two mutations that are related to one another is the product of their separate probabilities. If every 10<sup>7</sup> duplications of DNA a mutation occurs the equation would start to look like this. 10<sup>7</sup> x 10<sup>7</sup> or 10<sup>14</sup>, that is a one followed by 14 zeroes, a hundred trillion! Two mutations, related or not would barely change finch beak sizes due to drought, or change the shape of a fly wing.
This is patently impossible as science coupled with mathematics has shown us. Simply put the odds of getting two mutations that are related to one another is the product of their separate probabilities. If every 10<sup>7</sup> duplications of DNA a mutation occurs the equation would start to look like this. 10<sup>7</sup> x 10<sup>7</sup> or 10<sup>14</sup>, that is a one followed by 14 zeroes, a hundred trillion! Two mutations, related or not would barely change finch beak sizes due to drought, or change the shape of a fly wing.


What are the odds of getting three related mutations? That is, again taking into account the mutation rate of duplicated DNA, one in a billion trillion or 10<sup>21</sup>. Suddenly the [[ocean]] isn't big enough to hold enough bacteria to make that chance very likely. You can quickly tell that at just three related mutations, evolution via mutation and [[natural selection]] as its mechanism to produce truly novel information or molecule-to-man change is woefully inadequate.
What are the odds of getting three related mutations? That is, again taking into account the mutation rate of duplicated DNA, one in a billion trillion or 10<sup>21</sup>. Suddenly the [[ocean]] isn't big enough to hold enough bacteria to make that chance very likely. You can quickly tell that at just three related mutations, evolution via mutation and [[natural selection]] as its mechanism to produce truly novel information or molecule-to-man change is woefully inadequate. <ref>[http://links.jstor.org/sici?sici=0025-1909(196806)14%3A10%3CB638%3AMCTTNI%3E2.0.CO%3B2-5 Mathematical Challenges to the Neo-Darwinian Interpretation of Evolution] (Wistar Institute Press, 1967)</ref>


====Protein folds====
====Protein folds====
Calculations have been done and research published in the ''Journal of Molecular Biology'' by Douglas Axe, a [[protein]] scientist. He shows just how exceptionally rare the chance of getting certain working protein sequences can be let alone whole genomic structure evolution from fish to man as ultimately predicted. In other words, as Dr. Axe wrote regarding the probability it is, "''less than one in a trillion trillion trillion trillion trillion trillion.''" [http://www.dallasnews.com/sharedcontent/dws/dn/opinion/viewpoints/stories/DN-bchapman_10edi.ART.State.Edition1.43d902d.html]
Calculations have been done and research published in the ''Journal of Molecular Biology'' by Douglas Axe, a [[protein]] scientist. He shows just how exceptionally rare the chance of getting certain working protein sequences can be let alone whole genomic structure evolution from fish to man as ultimately predicted. In other words, as Dr. Axe wrote regarding the probability it is, "''less than one in a trillion trillion trillion trillion trillion trillion.''" <ref>D.D. Axe, “''Estimating the Prevalence of Protein Sequences Adopting Functional Enzyme Folds'',” Journal of Molecular Biology, 341(5) (2004):1295–1315</ref>


== References ==
== References ==
<references/>
==External Links==
===Creationist References===  
===Creationist References===  
* [http://www.nwcreation.net/articles/recombinationreview.html Genetic Variability by Design] by Chris Ashcraft. TJ 18(2) 2004.
* [http://www.nwcreation.net/articles/recombinationreview.html Genetic Variability by Design] by Chris Ashcraft. TJ 18(2) 2004.
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* [http://scienceweek.com/2005/sa050107-4.htm Epistasis in RNA Viruses] Mutations, even those judged to be "beneficial," ''decrease'' fitness
* [http://scienceweek.com/2005/sa050107-4.htm Epistasis in RNA Viruses] Mutations, even those judged to be "beneficial," ''decrease'' fitness
* [http://www.eurekalert.org/pub_releases/2007-04/cp-mim033007.php Mutation improves memory, may lead to memory-enhancing pill]
* [http://www.eurekalert.org/pub_releases/2007-04/cp-mim033007.php Mutation improves memory, may lead to memory-enhancing pill]
* D.D. Axe, “''Estimating the Prevalence of Protein Sequences Adopting Functional Enzyme Folds'',” Journal of Molecular Biology, 341(5) (2004):1295–1315
* [http://www.pnas.org/cgi/content/abstract/0607280104v1 ''Complete genetic linkage can subvert natural selection''] by Philip J. Gerrish, Alexandre Colato, Alan S. Perelson, and Paul D. Sniegowski, ''Proceedings of the National Academy of Sciences'' USA, published online before print April 3, 2007


== See Also ==
== See Also ==
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